Taxonomy Reading

 NOMENCLATURE RESOURCES

SEQUENCE ANALYSIS

Ribosomal Database Project for BLAST against type strains for 16S rRNA https://rdp.cme.msu.edu/seqmatch/seqmatch_intro.jsp

 Plant Associated and Environmental Microbes Database (PAMDB) is a multilocus sequence typing and analysis http://genome.ppws.vt.edu/cgi-bin/MLST/home.pl

Whole genome sequence analysis (Type strain projects) https://img.jgi.doe.gov/cgi-bin/m/main.cgi

Pathotype strains of Pseudomonas syringae https://guttman.csb.utoronto.ca/resources-software/characteristics-of-sequenced-psy-isolates/

 

STRAIN COLLECTIONS OR RESOURCES

Strain Information- good for searching the source of strains and for the origin of type material http://www.straininfo.net/

ATCC       American Type Culture Collection, http://www.atcc.org/ATCCAdvancedCatalogSearch/ProductDetails/tabid/452/Default.aspx?ATCCNum=700602&Template=bacteria

 

CFBP        Collection Française de Bactéries Phytopathogènes, http://www-intranet.angers.inra.fr/cfbp/recherche_e.php

 

DSMZ       Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, http://www.dsmz.de/catalogues/catalogue-microorganisms.html

 

ICMP        International Collection of Micro-organisms from Plants, http://nzfungi.landcareresearch.co.nz/icmp/search_cultures.asp

 

LMG         BCCM/LMG Bacteria Collection, http://bccm.belspo.be/db/lmg_search_form.php

 

NCPPB     National Collection of Plant Pathogenic Bacteria, Food and Environment Research Agency, http://www.ncppb.com/ncppbsearch.cfm

 

 

 

 

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